rs45746616 SNP Detail

Summary

• ID
  rs45746616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36985007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACTCATT CCATAATGTG
  GAAGAAGTCT TATGAAGCAA CTTGATTTTA AAATGAGAAG TAATGAAAAC AGCCTTCATA
  ATCTTGATTA ATCATCCCTG AATAGATTCA ACTGACTATT TCCACTGGAT ATCTAGAACT
  TGAAGATAAG GGAGTAAAAA GGATGACAAG AATTCTATAA GTATTGAGAA ATCCCAAAAA
  Y
  GTTTTTGTTA TGCATATCAA TCCAGAACAA TTACTTTTCA ATAAAGTAAC CCACGATCTC
  CTTCAATGTG TTGTGTGACG CTGGATTAGA GTGACCTTTG AAAGGTGGAA TTGGGTGGAA
  TGCATTTGTG TGTGTGTTGT GTGTTAGTGT GTGTGTATGT TAGTGTGTGT ATATGTGTAC
  TGTGTATGTA TGTGTGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61769432	NES17696869	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45746616					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769432	NES17696869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36985007 () rs orientation: forward

Symbol	Name	Function Class
Rr388271	regulatory region 388271	1408 bp downstream