rs45746657 SNP Detail

Summary

• ID
  rs45746657
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCG GGGTGATAAC TGCAGAAAGT
  C
  CGGGGGGATC TGGGAAATTC CTCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136014991	ENSMUSSNP7084802	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321002895	CHEV_3_142223397	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45746657					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266194 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	within coordinates
Rr586453	regulatory region 586453	12 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	396 bp proximal
Tssr32157	transcription start site region 32157	328 bp downstream
Tssr32158	transcription start site region 32158	299 bp downstream
Tssr32159	transcription start site region 32159	267 bp downstream
Tssr32160	transcription start site region 32160	219 bp downstream
Tssr32161	transcription start site region 32161	79 bp downstream
Tssr32162	transcription start site region 32162	105 bp upstream
Tssr32163	transcription start site region 32163	139 bp upstream
Tssr32164	transcription start site region 32164	172 bp upstream
Tssr32165	transcription start site region 32165	188 bp upstream
Tssr32166	transcription start site region 32166	524 bp upstream
Tssr32167	transcription start site region 32167	1251 bp upstream