rs45746762 SNP Detail

Summary

• ID
  rs45746762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81201385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTGAGC AGACCTATGA
  AATGGGACTT TTCTGCTAGG TGTGGGTGGC GACACTAAGT GTGCCAAGGC AGGAGGATCT
  CTGTGGGCTT ATGAACAGCT CGGGATACAC ACAAGAATCT AAAAAGGGAG GGCATTCAGG
  CACATGGCTG CCACTGCAGC ACCTGTAGAC AGGAGAATCA ATAGACCCCT CTGCTTGGGA
  R
  TATGAGTGGC AGCACCTGTC TGCTTGGGAG TGGGTGTGTG CAAATGCCTA ACTTACAACC
  CTTGCATACC TCCATCCCAG CCACCTGAGC TGCTGGTAGG GGTAGGGGAT CTGGGGTCTG
  GGTGAAGAAA GGGACCAAGG GCAGGAACCC ACCGGTAGAG ATGGTCGGGG AAGTAGAGTT
  CAAGGGTGCC TGAGGGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387623	NES15272390	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45746762					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387623	NES15272390	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81201385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	107 bp distal
Fzr1	fizzy and cell division cycle 20 related 1	1328 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Tektip1	tektin bundle interacting protein 1	within coordinates
Tssr94743	transcription start site region 94743	1513 bp downstream
Tssr94744	transcription start site region 94744	1250 bp downstream
Tssr94745	transcription start site region 94745	1179 bp downstream
Tssr94746	transcription start site region 94746	1137 bp downstream
Tssr94747	transcription start site region 94747	1125 bp downstream
Tssr98595	transcription start site region 98595	692 bp upstream
Tssr98596	transcription start site region 98596	233 bp downstream
Tssr98597	transcription start site region 98597	256 bp downstream
Tssr98598	transcription start site region 98598	283 bp downstream