rs45747067 SNP Detail

Summary

• ID
  rs45747067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55795166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGACCCT CGCCCGGGGT
  GGGGCTTCGG GGGCTTCCCT CGGGGCCGGG CCAGGCGGTG GAGGGCGTGG TGCGGCCTAT
  CTGGGCCCGC CCCCGAGGCC CTTAGGGGAT GGTGGGAGAC CCAGAGGCAG AGGCAGACCT
  ACCCTCTCCC TCTCCCTTCT GCCGTAGAAA AAGCTGTCCC AAACCCTGGC TGCCGTCTCC
  Y
  AGTGAGTGCC GCTCGGATTT GGCCATTGGA CTAGGTCCAA ATGTCTGTTT CTGCAACTGC
  GACACAGAAA CAAGGAATAA TGTGGTTATT AGGACTAATG ATGGCGCAGT CGCTGTGAGT
  CCCGGTTTTA GGGCATTAGG CAGCCTTCCA GACTGCCAGA TCCTTTTTCT CGGGAGATGG
  GACAAGACCG ACATACCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60465933	NES16445999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45747067					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60465933	NES16445999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55795166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	within coordinates
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	942 bp downstream
Rr517155	regulatory region 517155	1081 bp distal
Rr517156	regulatory region 517156	1705 bp distal
Rr517157	regulatory region 517157	910 bp distal
Rr517158	regulatory region 517158	844 bp distal
Rr517159	regulatory region 517159	within coordinates
Tssr138799	transcription start site region 138799	1003 bp downstream
Tssr138800	transcription start site region 138800	973 bp downstream
Tssr138801	transcription start site region 138801	939 bp downstream
Tssr138802	transcription start site region 138802	911 bp downstream
Tssr138803	transcription start site region 138803	369 bp upstream
Tssr141546	transcription start site region 141546	278 bp upstream
Tssr141547	transcription start site region 141547	196 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	186 bp upstream