rs45747138 SNP Detail

Summary

• ID
  rs45747138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45024740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACCCTC TTCTGGAATG
  TCTGAAGAGC ACAGGGTACT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT ATATATATAT
  ATATATATAT ATATATATAT ATATATAGTG AGAGAGAGAG AAAAGTACAC ATCTTGAAGG
  CAAACAGTAT GATGGTTCTA ATTGGGAGGG GAAGAAACAC AGGATTGATA TTCCCTGAAG
  W
  AGGGTCACTA GATCTTCAAC TGAGTCACTA CCTGCACAAA ATCAAGGCCA GCCTGTCTAA
  ATGGGTTCCA GGACATCGAG GGCCACAGAG AGAAACTGTC ACCAAAACCC AAAACAAACC
  AAAACAATCA AATAAACAAA AACAGCTCCC CCATCCCCCC AAAAGAAAGA AATCCCAATG
  AATCTGTTTA CTAAGCAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61003652	NES16117020	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45747138					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003652	NES16117020	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45024740 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	1137 bp downstream
Tssr66520	transcription start site region 66520	1854 bp upstream