rs45747668 SNP Detail

Summary

• ID
  rs45747668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113364972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA GCACAGCAAA GGTGGCCTGC
  R
  GGGATCTGCT TGTCTATAAA TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145682759	ENSMUSSNP1816281	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322424329	CHEV_7_120909249	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45747668					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113364972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	within coordinates
Rr653859	regulatory region 653859	within coordinates
Rr653860	regulatory region 653860	1954 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	263 bp upstream
Tssr68625	transcription start site region 68625	40 bp upstream
Tssr68626	transcription start site region 68626	102 bp upstream
Tssr68627	transcription start site region 68627	171 bp upstream
Tssr68628	transcription start site region 68628	290 bp upstream
Tssr68629	transcription start site region 68629	309 bp upstream
Tssr68630	transcription start site region 68630	348 bp upstream
Tssr68631	transcription start site region 68631	384 bp upstream
Tssr68632	transcription start site region 68632	506 bp upstream