rs45748328 SNP Detail

Summary

• ID
  rs45748328
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118309764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC ACCGTCACTC ACCCACTGAG
  A
  GCCTGGCTCC GGAGCCTGCG GGCTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132901475	ENSMUSSNP6081581	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323870310	CHEV_11_118280252	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45748328					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118309764 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	within coordinates
Gm72450	predicted gene, 72450	149 bp upstream
Rr403174	regulatory region 403174	within coordinates
Rr461045	regulatory region 461045	within coordinates
Rr461046	regulatory region 461046	75 bp proximal
Rr461047	regulatory region 461047	160 bp proximal
Tssr106139	transcription start site region 106139	285 bp upstream
Tssr112169	transcription start site region 112169	18 bp downstream
Tssr112170	transcription start site region 112170	80 bp downstream
Tssr112171	transcription start site region 112171	178 bp downstream