rs45749377 SNP Detail

Summary

• ID
  rs45749377
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37883313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCGTTGG TGTTCTTAAA
  GGACAAAACA ATATGTCTTT TCGAATACAT TTTTTCAAAC AATAACTGAA TATACGCTTT
  AGATATTTGA AGTTTTTCAT TAATATCCAA CCAACAATTC ATAACTATGT GCTTAGAATC
  TTTATAAACA TAATCAAGCC CATTAGCCCA GCGGCATTCC TTCTGCATAT GATTGTGTGG
  T
  ATCTTACTAT ACAGCCTTTT AATTTCACTT TTCTTGCCCG ATGATGATTC CAAGAATTTA
  TGCAAGGTTA AATTGAGAAT TTTTGTTCTC TTTGTCTTTT TTTTCTCCAA AATTATACAT
  GCCATCGATT AAAGCTAAAA TGTAAATATG GGTTGGGGTG GACAGCGTTG CTCACATTCC
  CAAGAGCAAA AGCTAACCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146963248	ENSMUSSNP2740793	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45749377					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37883313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9944	CpG island 9944	757 bp distal
Gm26672	predicted gene, 26672	within coordinates
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	Intron
Pcdhga1	protocadherin gamma subfamily A, 1	Intron
Pcdhga2	protocadherin gamma subfamily A, 2	Intron
Pcdhga3	protocadherin gamma subfamily A, 3	Intron
Pcdhga4	protocadherin gamma subfamily A, 4	Intron
Pcdhga5	protocadherin gamma subfamily A, 5	Intron
Pcdhga6	protocadherin gamma subfamily A, 6	Intron
Pcdhga7	protocadherin gamma subfamily A, 7	Intron
Pcdhga8	protocadherin gamma subfamily A, 8	Intron
Pcdhga9	protocadherin gamma subfamily A, 9	Intron
Pcdhga10	protocadherin gamma subfamily A, 10	Intron
Pcdhgb1	protocadherin gamma subfamily B, 1	Intron
Pcdhgb2	protocadherin gamma subfamily B, 2	Intron
Pcdhgb4	protocadherin gamma subfamily B, 4	Intron
Pcdhgb5	protocadherin gamma subfamily B, 5	Intron
Pcdhgb6	protocadherin gamma subfamily B, 6	Intron
Pcdhgb7	protocadherin gamma subfamily B, 7	1359 bp upstream
Rr536317	regulatory region 536317	1179 bp proximal
Tssr150733	transcription start site region 150733	1341 bp upstream