rs45749468 SNP Detail

Summary

• ID
  rs45749468
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTATCCA CTCATTGGCG GATGAACGTT TGAGCCGTTT
  CCATCTTTTG GCTGTTAGGA CTGATGTTAA AACATTTGGA TGCTGTGCTT CTGTCTGTGC
  M
  CATGTCCGTC CTCTTGTGGG TATTTCCTGG GTGGAATTGC TGGTTGAAGT GACACCTCAG
  TGTTTAACTA AGGAACTAAC TACCAAGTAG CTGTACCAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147535329	ENSMUSSNP4330321	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45749468					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	573 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1514 bp distal
Rr564564	regulatory region 564564	1365 bp distal
Rr564565	regulatory region 564565	487 bp distal
Rr564566	regulatory region 564566	1016 bp distal
Rr564567	regulatory region 564567	4 bp distal
Rr564568	regulatory region 564568	1477 bp proximal
Tssr20024	transcription start site region 20024	1334 bp downstream
Tssr20025	transcription start site region 20025	1318 bp downstream
Tssr20026	transcription start site region 20026	1167 bp downstream
Tssr20027	transcription start site region 20027	1724 bp upstream
Zfp661	zinc finger protein 661	1503 bp upstream