GTCTGCGCTC CATCCGTTTT GCCCTGGAGG TTCCTGGCCT CCAGTCTGTG GTTGCCAATG ATGCCTCTGC CCGGGCTGTA GAGCTTATGC ACAGAAATGT GGAGCTCAAT GGTGTGGCAC ATCTTGTTCA GCCCAACCAG GCAGATGCCC GGTAGGTTGA TTAGCCATTG TCATTGGTGG TGGTACCGGA GATAGAGCCC R GGCCTTCATG CGTGCTAAGC AGTGGCTGAG CAACAGCTCC AGCTCCCAAG AGGTCCCTGG AATGAGGCTT TCTGGGGACT AATCCTAACC CTGTTTAGCC TTGGGTCATA CTCTTTGAAC TCTTTTTTTT TTTTAAGATT TATTTATTTA TTATATGTAA GTACACTGTA GCTGTCTTCA GACGCCCCAG AAGAAGGTAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60644219 | NES16269470 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | G | A | A | A | A | A | A |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
||||
rs45750043 | SNP | A | A | A | A | A | G | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60644219 | NES16269470 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr8:85418118 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi20706 | CpG island 20706 | 1440 bp distal | ||||||
Rr666578 | regulatory region 666578 | 1676 bp distal | ||||||
Trmt1 | tRNA methyltransferase 1 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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