rs45750478 SNP Detail

Summary

• ID
  rs45750478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72960941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGCTGA CCCCCAAGCA
  TTAACATTAT CTTGTTGCTA TTTCCTAACT GTTAGTTTGC TACTGGTATG AATTGTAATG
  TAAGCATCTG ACATGCAAGA TACCTGAGAT GCGACCCCCA GATGGGTCAA GACCCACAGG
  TTGAGAAACA CTGGTGTGGG TGGCTCTGGG ATCACCCTGC CTGTGCTTCC CTTCTGATTC
  Y
  GCGTCATAGT CTGGGACATA TTTTCACATG GAATGCCACC CCCAGTAGAC AGGGATGGAT
  AGGACAATTC TCTGTTAGAA AGCACTGGAA ATATCAAATA CAGGCAAGGC ACACTGACCT
  GCACTCTCTT CCTGAAGTCC CCCCCCACAC CCGCCCCCCC CCGGTGGGGA GTGTCTCCAC
  AGCCATAGTA AGAAACATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61180116	NES16682024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45750478					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61180116	NES16682024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72960941 () rs orientation: forward

Symbol	Name	Function Class
Rr399125	regulatory region 399125	418 bp downstream
Tec	tec protein tyrosine kinase	within coordinates
Tssr46619	transcription start site region 46619	498 bp downstream