rs45752378 SNP Detail

Summary

• ID
  rs45752378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84442708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGACAGGA TCTCTTTACA TAATCCTGGT CGTCCTTGAA
  CTCTCTCTCT GAAGACCAGG TCGGGCTCGA ACTCACTGAG GTCCACTTGG CTCAGTCCCC
  R
  GAGGTCTGGT ATTAAAGGCG TGTCCCACTA AGCCCGGCTT CACATTTATC CTTTCACCAG
  CACAATAAAT GTTTTTAAAG CAGTACTGCC TAAAGACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145360652	ENSMUSSNP3372412	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322745601	CHEV_8_86239978	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45752378					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84442708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			131 bp distal
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr382392	regulatory region 382392			1972 bp downstream
Rr401010	regulatory region 401010			804 bp downstream
Rr666291	regulatory region 666291			1531 bp distal
Rr666292	regulatory region 666292			521 bp distal
Rr666293	regulatory region 666293			within coordinates
Rr666294	regulatory region 666294			509 bp proximal
Tssr78284	transcription start site region 78284			875 bp downstream
Tssr78285	transcription start site region 78285			841 bp downstream
Tssr78286	transcription start site region 78286			791 bp downstream
Tssr78287	transcription start site region 78287			767 bp downstream
Tssr78288	transcription start site region 78288			555 bp downstream