rs45752485 SNP Detail

Summary

• ID
  rs45752485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40503694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGCTCT GTGGCTGTGA
  GGACGTCCCT TAGCAACCTC AGATAGTAAT TTTTCTTAGG TTGGATGGAA CATAGTAACG
  TGCTGGATTC TTTGCTAACT GAAAATAGAA GTATTCGGAT TTCAGAAAGA ACTGGATAAA
  TATTAATGTT GGTGATTATG AAATCTCATT GTGAGCCGTG TGAGTTTGAG TGTGTATTCC
  R
  TGATTGTGCT GAATGAAGAC CTCTAAAAAT GAAATTCTCT CCAATCTCAT CCCTGGGAAT
  AGTTGCTTCC TCATGCCTGC TGCTCCATCC ATGGAAAATG ACTAAAGAGA ATTATTATTT
  GTTCCCGAGA TTCTTCTGAT AAGTCTAAAC TATTTGCATG TAATTGAGCT GGGCAGCATG
  GCACACTTGG GAGGCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721687	NES16361180	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45752485					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721687	NES16361180	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40503694 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1018 bp upstream
Rr16188	regulatory region 16188	907 bp proximal
Rr29358	regulatory region 29358	1106 bp proximal
Rr371160	regulatory region 371160	719 bp upstream
Tssr6465	transcription start site region 6465	1107 bp upstream
Tssr6466	transcription start site region 6466	1169 bp upstream
Tssr6467	transcription start site region 6467	1431 bp upstream
Tssr6468	transcription start site region 6468	1442 bp upstream
Tssr6469	transcription start site region 6469	1535 bp upstream
Tssr6470	transcription start site region 6470	1554 bp upstream
Tssr6471	transcription start site region 6471	1646 bp upstream
Tssr6472	transcription start site region 6472	1760 bp upstream