rs45753383 SNP Detail

Summary

• ID
  rs45753383
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACACCTCC AAAGGACAGT
  TTGATTTGGG GCTTTATTAA TCAGAGGTCT ATCTGTCCCG CAGGAATGAG GATGTAGTTC
  GGTTGGTAGA GTGCTTACGC AGCATGCAGA AAACCCTGGC CCCGAGCCCC AGAGACGTAT
  TAATAAAACA GCGCAGGCTA GACACCACTG AGGCCTGTAA TCGCAGGAGG GCGGAAGCAG
  K
  AGAATCAGAA GTTCAAGGTC ATCCTTGGCT ACATGGCAAG TTCAAGGCTA GCCTGGCCTT
  GCTTCAAAAA ACAAAGCCAG AATAAATGAC CCTGGTGGAA GCCTCTATTC TTTCCAAGGA
  GGTGTCTGTC TATCCCTTGA AGTGAGACTG ATCACCTTCA GTGGTTTTCA CAGTGACTTT
  GTCTTCCTTC TTGGCTCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148400001	ENSMUSSNP3166608	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45753383					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	153 bp proximal
Cpgi18407	CpG island 18407	1959 bp proximal
Gm71929	predicted gene, 71929	991 bp downstream
Pnma8b	PNMA family member 8B	381 bp upstream
Rr368243	regulatory region 368243	155 bp upstream
Rr642821	regulatory region 642821	932 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	304 bp proximal
Rr642824	regulatory region 642824	1342 bp proximal
Tssr64660	transcription start site region 64660	344 bp upstream
Tssr64661	transcription start site region 64661	1393 bp upstream
Tssr70792	transcription start site region 70792	1348 bp downstream