rs45753960 SNP Detail

Summary

• ID
  rs45753960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101261715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTGTCCC TCTACCCCAG
  TAGCTGTAAG AGAATCCTGT GGGCAGGGGC TATATTTCCA TCATCTTTCT GATTTGCCAG
  TTACCTTGAT GCCAGCAGTA TTCCCTACAG GGGGATTGCT GCTTTATGAA GATAAGCCCT
  GTCCTGTCTG TCCCCCGCCT GCACTTCAGT GTTCCTTCTT CTTTCCTGAT TCCAAGATCA
  Y
  ATCCAAAGTG TGCTGCAGAG CACGGCCTTT ATGTTGCTTT GCTAGAGGCA AGATGTCTGT
  CCCAGGGTAG TACACAGGAG TTGGCATGCA TGCAGGCTCA GGAGAGACTG CTGGAGCCAG
  GCCTGTGTTG TGCCAGCACC CAAGGGCTTA GCTGTAAGCT GGTGGGGCTG AAATTTGGTG
  GATCGTCAGG GTCAGTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63630185	NES17037586	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45753960					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63630185	NES17037586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101261715 () rs orientation: forward

Symbol	Name	Function Class
Gm35853	predicted gene, 35853	within coordinates
Krt80	keratin 80	within coordinates
Rr306049	regulatory region 306049	715 bp distal
Rr311441	regulatory region 311441	285 bp proximal
Tssr133285	transcription start site region 133285	928 bp upstream
Tssr136556	transcription start site region 136556	697 bp downstream
Tssr136557	transcription start site region 136557	738 bp downstream
Tssr136558	transcription start site region 136558	755 bp downstream