rs45756047 SNP Detail

Summary

• ID
  rs45756047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63215193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTCTTA CAGACATGAA
  CCTCACAAAC TTGAAGACAC CGCAGCTTCC TGATCTGCAG CGGACTCCAG GCTAACTTTT
  TAAGATTCAT TTTTAGTTTA TGTGTGCATG TGCTTATCTG TGTGTGGGTA ATGTGCACTT
  CTAAGTGCCG GTGCTCACAG TCCAAAAGAG AGTGGAGAAT TCCCTGATAA GGTTACATGG
  Y
  AGCTGGGAGT CTTCTGACTG GGCTAGTGGG AACCGAACTC GGATCCTCTC TGCAAGGCAC
  TCTTAACCGC TTGACTCTCC CTCCAGCTCC GACTGAGCTA ACTTTTAGTT TTTGTCAGTT
  CTCCCCGTCG GTGGAATGAA TAAAATACTA CCCAACATGA TCACCGGGCT AGACAAAAAC
  AAACAGTAGC GTGGACAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss149153764	ENSMUSSNP6883874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs45756047					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63215193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	428 bp proximal
Eef1b2	eukaryotic translation elongation factor 1 beta 2	797 bp upstream
Gm56065	predicted gene, 56065	1949 bp upstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	within coordinates
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	587 bp upstream
Tssr7054	transcription start site region 7054	784 bp upstream
Tssr7055	transcription start site region 7055	1017 bp upstream
Tssr7056	transcription start site region 7056	1057 bp upstream
Tssr7057	transcription start site region 7057	1085 bp upstream
Tssr7058	transcription start site region 7058	1712 bp upstream
Tssr11882	transcription start site region 11882	619 bp downstream
Tssr11883	transcription start site region 11883	771 bp downstream