rs45758355 SNP Detail

Summary

• ID
  rs45758355
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40640572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TATAGTCTAG GAAAAGTATT
  C
  AAATCTATCA AGAACTGGAG CTAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136336729	ENSMUSSNP3855418	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322918963	CHEV_9_40537359	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45758355					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40640572 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	1440 bp proximal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	1671 bp upstream
Rr1916	regulatory region 1916	501 bp upstream
Rr676903	regulatory region 676903	1181 bp proximal
Rr676904	regulatory region 676904	1682 bp proximal
Tssr84462	transcription start site region 84462	1678 bp upstream
Tssr84463	transcription start site region 84463	1727 bp upstream