rs45758889 SNP Detail

Summary

• ID
  rs45758889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31187059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT GCATCAGTAG TGGGATGCCT
  Y
  CTCTGAACGC ATGAGGACCT GAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146401683	ENSMUSSNP2394458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320221794	CHEV_2_31152567	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45758889					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31187059 () rs orientation: forward

Symbol	Name	Function Class
Ncs1	neuronal calcium sensor 1	1058 bp downstream
Rr554600	regulatory region 554600	1668 bp distal
Rr554601	regulatory region 554601	1862 bp distal
Rr554602	regulatory region 554602	439 bp proximal
Rr554603	regulatory region 554603	1972 bp proximal