rs45759793 SNP Detail

Summary

• ID
  rs45759793
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39597113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCACCTC TATTTACTTC ATACATTCTA TGATTCAATT
  TACATAAAAC CAAACATGCA AGCATCTGCA CTCATGCACA AACCCATGCA TGCATAAGCA
  M
  ACACACACAC AGAGGATGCT ACCATATGCA GAGCTATACT TCGGAATTAC AGATTGGGGA
  AGATGTTCAT AGGCTATATA GTATTCTGTC ATAAACTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148969068	ENSMUSSNP500639	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45759793					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39597113 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409899	regulatory region 409899	1662 bp distal
Rr409900	regulatory region 409900	1041 bp proximal
Tssr11387	transcription start site region 11387	203 bp upstream
Tssr11388	transcription start site region 11388	269 bp downstream
Tssr11389	transcription start site region 11389	330 bp downstream
Tssr11390	transcription start site region 11390	899 bp downstream
Tssr11391	transcription start site region 11391	929 bp downstream