rs45766418 SNP Detail

Summary

• ID
  rs45766418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69540780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AGGCTTGCGC CATCACACCA
  R
  GCCAACCGCT AGCTAATTTT ATCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145091528	ENSMUSSNP2739037	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss322693714	CHEV_8_71612027	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45766418					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69540780 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	608 bp upstream
Cpgi20406	CpG island 20406	375 bp proximal
Rr400869	regulatory region 400869	358 bp upstream
Rr664484	regulatory region 664484	28 bp proximal
Rr664485	regulatory region 664485	1084 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	588 bp upstream
Tssr77657	transcription start site region 77657	605 bp upstream
Tssr77658	transcription start site region 77658	625 bp upstream
Tssr81518	transcription start site region 81518	1072 bp downstream