rs45767378 SNP Detail

Summary

• ID
  rs45767378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48266133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTGACT ACAAAGTTAA
  ATTAGAGATG CTCACAGATT TACTTTCCAG AAGTTGCCAG ACCTGACTGG TAAGATGCCT
  TCTACAGCCA TGCAGCTTTC TAGGCCCATC CCTGAAAAAC ATCTCCAGTC AAAAAAAAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA GGAGCAGAGC AGCCGCAGAC CCTGAGCCTA
  Y
  TAACACTGCT ATCCTGAATT AGCTCCTGAG CTTTGCGCAG TGGCAGTATC GTAGCCAATG
  AGGTTTATCC GAGGCGCGAT TATTGCTAAA CTGAATTAGC TCCTGAGCAG GCCAACTGCC
  TTCTACATGA GCCCAAGTCT CGCCCGAGCT AGTATCTTGC CGGCAAGAAT TCACTCAGAT
  AACCGGATCC TTCTACGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884039	NES16035330	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45767378					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884039	NES16035330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48266133 () rs orientation: forward

Symbol	Name	Function Class
Gm22122	predicted gene, 22122	29 bp upstream
Gm30362	predicted gene, 30362	within coordinates
n-TCgca12	nuclear encoded tRNA cysteine 12 (anticodon GCA)	252 bp upstream
Tssr56117	transcription start site region 56117	17 bp upstream