rs45768580 SNP Detail

Summary

• ID
  rs45768580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTCTTG CTAGGCTTGT
  TCAGTGATTT CCTCCCTGTA CCTAATAATT ACAGATGACA TTCGTGAGAG AATGACTAAG
  AAGTGAGGGG GCAGGAGCGG ATGGCATGTG GTTCTATTCA GAGATGTGCC GGGTAAGATG
  GACGAACTGC TTGGCTTGGG TTTCAGGTGT AGCTTCCCAC CTCTGCGCAC CCTGTTCCCC
  R
  CATCCTGTGC CTCCCGACAG AACAATTTGC CTTTTGAAAT GACAGTTGGA GGAAAATCTT
  TGCATCTCGG TACTTAAAGA GCTACTTAGA ATTACCCTTT GTCCCTAGTT TGTTCAATTG
  TTAAAAACAA ATAAAGCCAG GTTAATTTAG GAGGGTGGAT CATTTTTTTT TTTAAAATAG
  CCAAAGCAGT TTATATTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343997	ENSMUSSNP4014691	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320627909	CHEV_2_174299461	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45768580					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	488 bp distal
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	1019 bp upstream
Rr397557	regulatory region 397557	782 bp downstream
Rr572133	regulatory region 572133	1073 bp distal
Rr572134	regulatory region 572134	1337 bp distal
Rr572135	regulatory region 572135	970 bp distal
Rr572136	regulatory region 572136	942 bp distal
Rr572137	regulatory region 572137	765 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	1024 bp upstream
Tssr28036	transcription start site region 28036	941 bp upstream