rs45768851 SNP Detail

Summary

• ID
  rs45768851
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCTATA GGAAGGGTAA
  CAGGGGCAGC TGGAATTAGT CACTGAAGGA GCTGTGAGGG TGGCACTAGT TGTGAGGTAG
  GGGACTCGTT AAGACACTGC CAAGAGCCCT TAAACACTCA AGAAGCACTT AAACCATAAG
  TGGAGGGGCA GAATGGGAGA GAAGAGAGAA AGACAGACTA GGATTTGCAT CTTCCTGGAG
  S
  TCCTCCCAGA TTCGACCTCA GCGCTCTGTG GGAGGTGAGG ATGCTGTAGG CTTTATCAGT
  GTATCCTCAC CTGTAATGGA CTGACTCATT CCAGTGTGGG CTGGGTGCCT CCTGTTCCTG
  CAAAGTCATG GACAAACCCA GGTAGGAGAA GAGGCTGCCC TGCATCTTGT CCCTGCAGCA
  TCTCAGCTGG AAGTGGAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62767955	NES17350410	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C		G	G	G	G		G
ss325408106	CHEV_17_48486330	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45768851					SNP	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767955	NES17350410	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654033 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1786 bp downstream
Rr335233	regulatory region 335233	833 bp distal
Rr335234	regulatory region 335234	32 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	588 bp downstream
Tssr145094	transcription start site region 145094	560 bp downstream
Tssr145095	transcription start site region 145095	512 bp downstream
Tssr145096	transcription start site region 145096	479 bp downstream
Tssr145097	transcription start site region 145097	496 bp upstream
Tssr145098	transcription start site region 145098	823 bp upstream
Tssr145099	transcription start site region 145099	1475 bp upstream
Tssr145100	transcription start site region 145100	1504 bp upstream
Tssr145101	transcription start site region 145101	1541 bp upstream
Tssr145102	transcription start site region 145102	1640 bp upstream
Tssr148525	transcription start site region 148525	1685 bp downstream