rs45769315 SNP Detail

Summary

• ID
  rs45769315
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172115407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA CACAGGGCTT CCCCTCCCTG
  M
  ATAAACCACC AATCTTAGAT TTAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss120008604	PARCsnp_1.18380	PARC_SEQ	INBRED	f	SNP	A	C
ss120011679	PARCsnp_1.08107	PARC_SEQ	INBRED	f	SNP	A	C
ss146186624	ENSMUSSNP3843328	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
ss320123882	CHEV_1_174217971	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45769315					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172115407 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	52 bp downstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	1547 bp downstream