rs45769331 SNP Detail

Summary

• ID
  rs45769331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT TTCCTGGCAT CCCGATAGAA
  Y
  CCTCCTTAGA ATTCTCCTTT AAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144494211	ENSMUSSNP5384273	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319754085	CHEV_1_66370006	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45769331					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362591 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	1703 bp distal
Rr412443	regulatory region 412443	502 bp distal
Rr412444	regulatory region 412444	within coordinates
Tssr7142	transcription start site region 7142	1717 bp downstream
Tssr7143	transcription start site region 7143	1693 bp downstream
Tssr7144	transcription start site region 7144	1676 bp downstream
Tssr7145	transcription start site region 7145	1626 bp downstream
Tssr7146	transcription start site region 7146	1612 bp downstream
Tssr7147	transcription start site region 7147	1571 bp downstream
Tssr7148	transcription start site region 7148	1452 bp downstream
Tssr7149	transcription start site region 7149	1420 bp downstream
Tssr7150	transcription start site region 7150	1388 bp downstream
Tssr7151	transcription start site region 7151	1359 bp downstream
Tssr7152	transcription start site region 7152	1342 bp downstream
Tssr7153	transcription start site region 7153	1313 bp downstream
Tssr7154	transcription start site region 7154	515 bp upstream