rs45770666 SNP Detail

Summary

• ID
  rs45770666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130486821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCACTCAC TCTTTGGACT
  CTGTAAATGT GTCGTTCTTA TTTCTACGTG CAGACCGACC TGCGCTAGGA AGGTTACAGC
  ATACAACAGA AACAACGGCC GTGCACTCAC AGCAGCTCCA TTCCCATCCA GACAATATTC
  TCCCAACTTT GCACCTGTGT TAGTTCCCAT TTTATAACTC AAGTAAACAG TAACAGTGAT
  S
  GCCAGCACAC TCTTTCTTTT CGTTTCTTAC TGTTTTTGTT TTTTTCTCGT TTTTTATTAT
  CTTACGGGGA GAGGTTTCAG TTGTTTTGAG ACAAGATCTT GCTGTGTAGC CCAGCCTGGC
  CTGGAACTTA CTGGCTTCAG TCCTTCTGCC TCCGTATCCC GATCGCTGAA ATAACAAGCC
  CATGCCACCC CTGGCTCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61080658	NES16590450	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45770666					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080658	NES16590450	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130486821 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	457 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	866 bp upstream
Rr585190	regulatory region 585190	1659 bp distal
Rr585191	regulatory region 585191	1025 bp distal
Rr585192	regulatory region 585192	1615 bp distal
Rr585193	regulatory region 585193	1382 bp distal
Rr585194	regulatory region 585194	954 bp proximal
Rr585195	regulatory region 585195	1041 bp proximal
Rr585196	regulatory region 585196	1569 bp proximal