rs45773269 SNP Detail

Summary

• ID
  rs45773269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108886463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTTCCC GGGGCTGTAT
  AGAGGGCCAC ATGTGTTCAC TATTCAGGCT CCACTGGGGG AATTTTCCTA CCTTTGCTGG
  CTTGGCTCCT GCTCCCAGGC CAGGGACCTC GGTCTGTCTA CTACACACTC TGGTTTCTCC
  CTGCACTGTC TTTTTACTGT TAGCCAAACA TTTTGCCTGT TTTCTGTCTC CAGATGTGTG
  R
  TAATTGGTGT GAGGTTGAAA TCCCTGGTTC CTGGAGGACA GACAACCTGA CCTCCGACTG
  TCAGTTTCCC TTGACACCAT CTTCATAGAA ATACCTGACT CCTGTACCAC AGTCCAGTTT
  GTCCCAGTAG CAGGGACACC AAGGCCAATG GGTTATCTGG ACCAAAGGTG GGGTGGAGGG
  CCTAGGTGGT ATCTCCGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451641	NES16833311	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45773269					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451641	NES16833311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108886463 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	538 bp downstream
Rr686955	regulatory region 686955	1773 bp distal
Rr686956	regulatory region 686956	191 bp proximal
Rr686957	regulatory region 686957	1846 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	537 bp downstream
Tssr87212	transcription start site region 87212	1762 bp downstream
Tssr87213	transcription start site region 87213	1404 bp downstream
Tssr87214	transcription start site region 87214	1332 bp downstream
Tssr87215	transcription start site region 87215	1101 bp downstream
Tssr87216	transcription start site region 87216	1048 bp downstream
Tssr87217	transcription start site region 87217	975 bp downstream
Tssr87218	transcription start site region 87218	675 bp downstream
Tssr87219	transcription start site region 87219	442 bp downstream
Tssr87220	transcription start site region 87220	354 bp downstream
Tssr87221	transcription start site region 87221	135 bp downstream
Tssr87222	transcription start site region 87222	86 bp downstream
Tssr91571	transcription start site region 91571	320 bp downstream
Tssr91572	transcription start site region 91572	841 bp downstream
Tssr91573	transcription start site region 91573	998 bp downstream
Tssr91574	transcription start site region 91574	1228 bp downstream
Tssr91575	transcription start site region 91575	1279 bp downstream
Tssr91576	transcription start site region 91576	1364 bp downstream
Tssr91577	transcription start site region 91577	1821 bp downstream