rs45773315 SNP Detail

Summary

• ID
  rs45773315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70912272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA GACATGGACA CAGAATACAC
  K
  TTCCACTTAA ATTTTGTAGT CTTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132379964	ENSMUSSNP6208715	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45773315					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70912272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1340 bp distal
Derl2	Der1-like domain family, member 2	1605 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	1480 bp downstream
Rr402697	regulatory region 402697	1940 bp downstream
Rr450471	regulatory region 450471	1825 bp distal
Rr450472	regulatory region 450472	1616 bp distal
Rr450473	regulatory region 450473	1175 bp distal
Tssr102806	transcription start site region 102806	1867 bp downstream
Tssr102807	transcription start site region 102807	1829 bp downstream
Tssr102808	transcription start site region 102808	1808 bp downstream
Tssr102809	transcription start site region 102809	1793 bp downstream
Tssr102810	transcription start site region 102810	1558 bp downstream
Tssr102811	transcription start site region 102811	1508 bp downstream