rs45773642 SNP Detail

Summary

• ID
  rs45773642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcagTggca gcggtggtac actcctctaa
  tcccagcact caagaggcag aggcaagcag agatctctgt gagttcaagg ccaacttgtc
  tatggagcaa gttccaggac agccagggct gttgttacac agagaaatcc tgtcttgaaa
  R
  ctaaattaaa ATAATAATAA TAATGTGGTG CTGAATGGTT ATGGGTTTCA GAAGTTTCCA
  AAGGAATCTC TACCTTCTCT CTGAGAAGTT ATGAGCAGCA CCGCCACTTA GAGCCTGCAG
  AGAACTCTGG GGAAGCCAAG GAAACCCTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145546300	ENSMUSSNP1819696	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss319993372	CHEV_1_137685041	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45773642					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716202 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	171 bp distal
Rr419277	regulatory region 419277	464 bp distal
Rr419278	regulatory region 419278	164 bp proximal
Rr419279	regulatory region 419279	483 bp proximal
Rr419280	regulatory region 419280	1270 bp proximal
Rr419281	regulatory region 419281	1541 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron