rs45778971 SNP Detail

Summary

• ID
  rs45778971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126221664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCAGC GGTTAAGAGC
  ATTGACTGCT TTTCAGAGGT CCTGAGTTCA ACTCCCAGCA ACTACATGGT GGCTCACAAT
  CATCTGTAAT GGGATCTGAT GCCCTCTTCT GGTGTGTCTG AAGACAGCTA CCAGGTACTC
  ATATACAGAA AATGAATAAA TAATTCTTTT TAAGAACGAA TAGGCTAAGT GGGAGTGGTG
  R
  TACGGGTGCC TAGAATTTGA GGCTTAGAGG GCCACTTGAG TTCAGGAGTT TGAGACCAGC
  CTCAAGAAAA TGGACTTGCC ACCTGTGTTA CTTAGGAGTA TTTACTCATA GAACTTGTGT
  GTGAGAAAGA ACATTGTTTC GTCTGAGTAA AATTGCAACA TTCCAAACTC AGACCTCAGG
  CCACTCTACA CTTGGTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145875114	ENSMUSSNP6738179	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45778971					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126221664 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	754 bp downstream
Rr655536	regulatory region 655536	782 bp distal
Rr655537	regulatory region 655537	231 bp distal
Rr655538	regulatory region 655538	84 bp distal
Tssr69045	transcription start site region 69045	412 bp upstream
Tssr69046	transcription start site region 69046	753 bp upstream
Tssr69047	transcription start site region 69047	955 bp upstream