rs45779681 SNP Detail

Summary

• ID
  rs45779681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAGTGTT TGTAATTCCA
  AATTCTATTT GTTCCTTGCT GGCATGCAAG AAAACAATTG ACTTAAATAT TAATGTTATG
  CCACAATCTT GCTATAACTG CTTCTTGGTT GTAAAATATT TTCATGCCTC TATGTAAAAG
  AAAAAGGGAG AAATATGAAG TCATGAACTA AAGAGTAAAT GTTTTAATAT TTTCTTTCTA
  R
  TTTCTGCTCT GGAGACCACT GATTTTGTTT GTTTTGTTTT GTTTCTATTT TAGAGTCCTA
  AACTATTGTT GTCTTAACTA TTAGGCCAAA TTCAAGCTGG ATGGGTTGAT TTGTGCTCAG
  TGGTGAGTAT TTTCCTATTA AGTTCATCTA CAAGATTAAG CCACTGCTGT GTGAGGACAG
  GCAGTGATAT AAACGGCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144995896	ENSMUSSNP684548	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45779681					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940115 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277717	regulatory region 277717	1915 bp distal
Rr277718	regulatory region 277718	486 bp proximal
Rr285448	regulatory region 285448	1886 bp proximal