rs45780816 SNP Detail

Summary

• ID
  rs45780816
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTTCTT GTTCTAATTA TTTCTGTAGG CACTGTGAAA
  TGACCCCCCA GAATCTCACT TCCTTTACTA TACAGCATTA GAGAGAGGCA CAAATTCATC
  S
  TCATTTCCCC AGGGCGAATC TAGGCCCTTA GAGGACAAGT ATGTCAGCCC GTGAGGACAG
  CACTTAAGGA GGGCAAGGAT TTGAAATCCG CCAGTTTGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135939616	ENSMUSSNP398471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss320975353	CHEV_3_137000087	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45780816					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042884 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	993 bp upstream