rs45781646 SNP Detail

Summary

• ID
  rs45781646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57389901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACGGGCT CTCACGTACC
  CCAGGCTGTT CTCTAACACC ATGTAGCTCA GGATAACCTT GAACTCCTGT TCCTTGTGCT
  CCACTGAACA CTGAGATGCT GACAGACATC AGGAAACCCA GTGTCTGTGG TTCTGGACCC
  TGGACCCAGG CAAGTACCCA CCCTGTCCTG TCCCCTCCTG CCTCTGCCTC CATCTGTTCT
  Y
  CTCACACCCT CTGCTTCAGC CTCCAGATTT ATTTTTTTAG CCAAGACATA AAATCATACA
  CATTTGTGTG TGGGGGCACA TTGTATTTTG ATACAGGTCC ATACTGTACG TTGTTTGAAT
  TAGGATAAAG ATACCAACTA CCCCAAACAT ACATCAATGT TTTATTTACC TTAAATTTCC
  CTTCAGCTAC ATGGGATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62807918	NES17358146	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45781646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807918	NES17358146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57389901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	1061 bp distal
Gm56907	predicted gene, 56907	within coordinates
Rr529269	regulatory region 529269	1844 bp proximal
Tssr148891	transcription start site region 148891	1951 bp upstream
Tssr148892	transcription start site region 148892	1932 bp upstream
Tssr148893	transcription start site region 148893	1719 bp upstream
Tssr148894	transcription start site region 148894	1647 bp upstream
Tssr148895	transcription start site region 148895	1243 bp upstream
Tssr148896	transcription start site region 148896	1176 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates