rs45781696 SNP Detail

Summary

• ID
  rs45781696
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118533912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTT ATGTTTTTGA AAACCATTCT
  W
  AGAAGCATAG AAGGGAAGAA TGTCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61229486	NES16855687	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A	A		T	A	T		A
ss137041948	ENSMUSSNP5840735	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T				A
ss323216712	CHEV_9_118613962	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45781696					SNP	A	A	?	A	A	T	A	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229486	NES16855687	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118533912 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688310	regulatory region 688310	681 bp proximal
Tssr87646	transcription start site region 87646	1485 bp downstream
Tssr87647	transcription start site region 87647	1459 bp downstream
Tssr87648	transcription start site region 87648	1440 bp downstream
Tssr87649	transcription start site region 87649	1398 bp downstream
Tssr87650	transcription start site region 87650	1356 bp downstream
Tssr87651	transcription start site region 87651	1332 bp downstream
Tssr87652	transcription start site region 87652	1055 bp downstream