rs45781850 SNP Detail

Summary

• ID
  rs45781850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96094237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TTCTCGCCAT CAAGATAAAC
  R
  CGTGCATAAA TAACAAAGGA TTAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132675318	ENSMUSSNP3913124	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323820149	CHEV_11_96064725	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45781850					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96094237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	within coordinates
Gm11538	predicted gene 11538	43 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Rr455321	regulatory region 455321	1932 bp distal
Rr455322	regulatory region 455322	1193 bp distal
Rr455323	regulatory region 455323	814 bp distal
Rr455324	regulatory region 455324	within coordinates
Rr455325	regulatory region 455325	46 bp proximal
Tssr104437	transcription start site region 104437	30 bp upstream