rs45781922 SNP Detail

Summary

• ID
  rs45781922
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127653967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACCTGGA ATTAACTAAA
  ATCCAAGCAG TTGGGTTCAC CTGTGAGGGA TTTTTTCCTA ATCCAATCAT TTGAAGTGGG
  AAGAGCCATC TTTAATCCAG ATCATTTGAG GTGGGTACAT CCACCTTAAG TATGGGCCAC
  TCCTTCCTGT GGCAGCCATA TAAAGGGCTT TGAAGGAGGA GGCTTTTGTT CTTTGCCTGT
  K
  TGCCCTCCCT CTCACTGGCA AGTCTAACCC TTCACTGGCG TCAGAGCCTA CTTCTTCAGG
  ATTCCTGTGT ATACTGAAGA CCAGCTTAGA CATCCAGCCT CATAGACTGA ATAACCGCTA
  GATTCTCGGA CTTTCTGTTA GGATATGGCC AGTGCTGGAC TAGCCTAAGC ATAGCCTGTA
  AGCCACTCTA CTAAATCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873353	ENSMUSSNP7006071	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320957584	CHEV_3_127563236	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45781922					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127653967 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Rr584887	regulatory region 584887	1080 bp proximal
Tssr31614	transcription start site region 31614	1267 bp upstream