rs45783538 SNP Detail

Summary

• ID
  rs45783538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:5272544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTTGTC TTTAGCCCAG
  CAGAGCTGCC ACACCATTGA AAGCAGAGTG TCTCATCTCA TGACCCTTAG GGCCCTGCCC
  TGACATACTG CATAAGTTCC CCTGAGCTGC CCTGGCCTAT GGAAGGGGTG TGAATAAGAA
  GGACCTCAGA CTGTGTTCTT CCCTCAAAGT ATCACAACCT ACAACCTCTG CACTGCTCAG
  S
  CCTAACTCTG GTGACCCTCT TCCCAGAAGC CTGTCTTGAT TACCCAGCCT GTGAGGACAG
  TGGTGCCAGG CTGCCCTAGC TCGGCCCACT CTCAGTGCAG ACCCTATGAC ACAATGGTTA
  CGTAACCAGT CCTTTACACG GCTCGACTCA GTGGATGCCA GCAGCTGTAG GTTTTTTTTT
  CTTTCTTCCT TCTCCCATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61341851	NES16953081	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45783538					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61341851	NES16953081	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:5272544 () rs orientation: forward

Symbol	Name	Function Class
Klhl29	kelch-like 29	within coordinates
Rr263718	regulatory region 263718	1079 bp proximal
Rr267587	regulatory region 267587	545 bp distal