rs45783693 SNP Detail

Summary

• ID
  rs45783693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26196130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATGTTT TTTTTTTTTT
  AAGAAATCAA GATTCCAGAA TTCTAACTAC AGTGAAATGT TGGTGGCAGG GTGCCTAGCA
  AAACATGCTC CTATCCATCA GTCCCATGTT ACAACAGTCA CCCAGTCACC TGTGTCTCCT
  GTGGTTGTCA GTGCCACAGC AACCCTCAAA CTGACAAGCC CTGGCAACAT GGGAGCCTCC
  Y
  GTAAGAAATG TACCCCAGGG CTGGTGAGAT GGCTCAGTGG ATAAGAGCAC CCGACTGCTC
  TTCTGAAGGT CCGGAGAGTT CAAATCCCAG CAACCACATG GTGGCTCACA ACCATCTGTA
  ACAAGATCTG ACGCCCTCTT CTGGAGTGTC TGAAGACAGC TACAGTGTAC TTACATATAA
  TAAATAAATA AATCTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60255369	NES15700140	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	C	C		T	C	T	T		C
ss325339342	CHEV_17_26114101	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45783693					SNP	T	C	T	T	T	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255369	NES15700140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26196130 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329922	regulatory region 329922	1730 bp distal
Rr329923	regulatory region 329923	within coordinates
Rr329924	regulatory region 329924	1471 bp proximal
Rr334464	regulatory region 334464	471 bp proximal