rs45785399 SNP Detail

Summary

• ID
  rs45785399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61498598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCAATTT AAAAGATTAA
  AGATTCTCAA CCTAATCCAA AGATATATTT AGTGGGTATT TAAAGAGGAA TGGGATAGGA
  ATATATTAAA GAATCTGTTT GCCATAGTTA AGTCATTATG TTTCTATAAA TGCAGAACAC
  TTAGTAAGTA TAGTAAAAAA AAAGAAATCA TGATTAAGGA TACACAGAGT GATTATTTTC
  M
  GGTATTTTGG ACATTCATTC ATAGTGTGTT CAATGAAGGT TCATGGCAAA ACAACCCACA
  TTGAGTCACC AGAAGCAGGA TACCAACGAC TTATCATGGA CCAAGTTTCA AGAAACATGA
  TGTGTGATCA CACACACACA CACACACACA CACTCAGACA CACAGAGATA GACAGGGAGA
  GACAGAACAT AAAACATATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61823465	NES17746820	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs45785399					SNP	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823465	NES17746820	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61498598 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	1677 bp downstream