rs45785520 SNP Detail

Summary

• ID
  rs45785520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25424494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGCATG GCTGGCTGTG
  ACCAAGACTG AGGTCAATAA AGCAAGCAAA TGCAGGTGCT GCATCCATGC CTCCCCCAGG
  CCCTCAGCAC ACTTCCTTGT TCTTGCCCTG ACACAACACC TAGAGTCACT GCAGACAGGT
  CTGTGCCTTC CAGTGGACTG TGAGCAGGCA AGGCACAGAT GTCTTAGATG TGTTCAGCTC
  Y
  ATGTAACTGT TCAACAAATT AGAAAGGTGT TCAGGAACAA TGCTAAGCAG CAGTAAACAG
  CTGCAAGCTA GTCAGATTAT AGTCCAACAG GCTGGGCCAA GTGGCCTCTC TTGAGCCATT
  GTACAACTGT TTCTTGAATC TGTACCCTCA TCAAACCAAA AGCAGGCTCC ACAGAGACCC
  TTCCTGAGTT GCTTATCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60979895	NES16139976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45785520					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60979895	NES16139976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25424494 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	within coordinates
Rr155557	regulatory region 155557	1494 bp distal
Rr160908	regulatory region 160908	1894 bp distal
Tssr71296	transcription start site region 71296	234 bp upstream
Tssr71297	transcription start site region 71297	945 bp downstream