rs45786269 SNP Detail

Summary

• ID
  rs45786269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTGCAA CCTGTGGCCT
  TTATTCACAT GTTTTATAAA TATTGTGGTT ATTGTATCTA AGGCTGTGAA ATGAGCTCAG
  CAGAGATTCT GTCTTCTCAC TCTCCTGCCT CCTCCTACTT CTCTCTGGGC CATCAGCTCA
  GGGTTGCTGT GTTTGGATTG GCATCTCTCA AGAGTAGAGA GTGAGTGTCT GTATAACTGA
  Y
  GGTTGATTGA ACTTATTTCT GGGAGAATGT CTGGTCAAGT CCACCATGAT TTTGCAAGCA
  AGCTGTTCGT TCCTGTTAGG TTGCTTTCCA ATTACAGGAC CTTCACAGAC TTCTGAAAGA
  TGTCCCTCAT ATACCTGGCT TGAATATATT TCTTTAAAAA TAAAGATTAT ATGATGAAGT
  GAACTGTGAA TTTCCTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134852996	ENSMUSSNP2134934	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45786269					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766446 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	933 bp upstream
Rr575767	regulatory region 575767	443 bp proximal
Rr575768	regulatory region 575768	944 bp proximal
Rr575769	regulatory region 575769	1819 bp proximal