rs45786375 SNP Detail

Summary

• ID
  rs45786375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGTAGGC CTATGCTGTA
  ATGGCCCACT ACTAGCCTCC TGGTGCTGCA TCTTTCAGAA AAGGATGAGT GGTGTGATGG
  TCTGATGGAA TTGGTGTGTC AAAAGAGGTC GTACATCAAT GGAATCTCTG AAAAATCTGC
  TAATAGGAAC ATGTTGCCTG GCTGGGAAGG GCAGCCAGAG AAATATATGA CAGGTAGTAT
  R
  GAGCAGGAGG ACAAAAGTGC CCGGCAAAAT ACTATATGCC ATCTACATAT CATTTTTAGA
  TAGATGATGA TGAGGTGGTG GTAGTAAAAT TGGTGGTAGG AACCCACAAC ATAGTTCCCT
  CTAGGTAACA ATCAGGCTGT AACTAGAGGC CATTGCTGGG AGAAACACAG AGGTGATCTG
  AATCTTGATG TCTTAAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020617	ENSMUSSNP1940639	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45786375					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1785 bp proximal
Gm55211	predicted gene, 55211	1536 bp upstream
Rr626833	regulatory region 626833	313 bp proximal
Rr626834	regulatory region 626834	1687 bp proximal
St7	suppression of tumorigenicity 7	1690 bp upstream
Tssr55085	transcription start site region 55085	1717 bp upstream