rs45789609 SNP Detail

Summary

• ID
  rs45789609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTG TTTTGTTTTT
  GAGACAGGCT GTTTCTGTGT AACAGAGCCC TGGCTATCCT AGACTCACTT CATAGACCCA
  GGACGGCTTT GAATTCACAG AGATCCACCT GTCTCTGCCT CCCGAGTGCT GGGATTAGAG
  GCGTGCACCA CCACACCTGG CCTCACTGCT TCTTAAAAAG AAATATTTCT GAGAATCAAA
  Y
  ATACAGATCT CTTCCTGTCC CTGGAGCAGA TGCCACCGAC TGTGGTGTAT CCCGTTTGTC
  TGCGTAGGAT CTCTTTACAC CTGGCAGGGG CAGCTGGTCT GGTCATCTGC CCACTCTCTC
  TGTGCTTCTG GCAGGTTGGC TTCTTCAAAC GGAACCTGAA GGAGAAGATG GAGGCTGATG
  GAGGTGTTCC AAATGGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145879532	ENSMUSSNP2945586	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs45789609					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932489 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	955 bp downstream
Tssr69201	transcription start site region 69201	253 bp upstream
Tssr69202	transcription start site region 69202	285 bp upstream
Tssr69203	transcription start site region 69203	333 bp upstream
Tssr69204	transcription start site region 69204	464 bp upstream
Tssr69205	transcription start site region 69205	1396 bp upstream
Tssr74988	transcription start site region 74988	1804 bp downstream