rs45789725 SNP Detail

Summary

• ID
  rs45789725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98438348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGTATATG CTAAAAGCCC TAAAGACAAT CCACAGGTAT
  TTATTTCTGC CAACGTAAAA GTCAAGCAAA CTCTTAGGAA TGAAATTTAC AGAAGTTGAG
  S
  CTCCAAGCCT GCTTACCACT CGCATTTCTT CTTGACAGTT TAGATTAAAA GAAAAAACAA
  AGAGCCATGC TTACACGGCT GACTTTAGAT ATACAACTAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss63626006	NES17036600	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45789725					SNP	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63626006	NES17036600	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98438348 () rs orientation: forward

Symbol	Name	Function Class
Ccnt1	cyclin T1	within coordinates
Tssr132942	transcription start site region 132942	917 bp upstream