rs45790394 SNP Detail

Summary

• ID
  rs45790394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40594967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCGTGGA AGAGCGTGGG
  GAAATGCCAA ACAGCAAAGA AGTTTGCACA GCCCCCCCCC CCCCAAAAAT GCTCAGCGTC
  TGTACCGGGA AGCTTCCCCG TCTCCCAGGC AACCGGCGCC TCAGCCAATC GCAACTGAGT
  ATCGGGGTCA CGTGGCCCGA CCTGGCAAAA TGGCGGCGCT GCTGGAGGCG CGGCTGGCGG
  S
  CTCTGGCGTC TGAGCTTCTG CCCCGGAGCT CTCGCGACCC AGAGGATGGC GGGCCTTGCG
  AGGGGAGACT CGCGTGGGCG CCCGCCCGAG CTCCCTGGAG ACCTGTCCTC ACAGGAAGAG
  GAAGAGGAGG AAGGCGACTC CGACGCCGGG GCCAGCAGCT TGGGCTCCTA CTCCTCAGCC
  AGCAGTGACA CGTAAGGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393033	NES15896200	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45790394					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393033	NES15896200	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40594967 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13108	CpG island 13108			within coordinates
Intu	inturned planar cell polarity protein			Intron
				mRNA-UTR
Rr397649	regulatory region 397649			within coordinates
Rr575837	regulatory region 575837			41 bp distal
Rr575838	regulatory region 575838			485 bp proximal
Tssr28955	transcription start site region 28955			28 bp downstream