rs45790656 SNP Detail

Summary

• ID
  rs45790656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5855667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATCATA CTAAATTATT
  TCTTCAAATT CTTTCTTTAT TTATTTGTTG TGTTGTTGTT GTTGTTGTAC CTTTCTAGGA
  CTAGTTTAGT TGGAAAGCGC TTGCCATTCA AGACAGCTGA GTTTGATCCC CAGCACCCAA
  GTAAAAAGCC AAGGATGTTG GTCCAACTTG TAACGCAGTG CTGGGGGTAG AGGCAGGAGG
  Y
  TCTCTGGCAT ATGATGGGCA GTCAGCCTAA GCTAATAGTT AAGCCCAGGT CCCAGTGACA
  GACCTTGTCT CTGAGAGCAG CTTCTGAGAA CACTCAAGGT TGACTTCTGG CATCCCCACA
  CATTGTACAT ATGCATGAAT GTGTGCCATA GCCACACACG GGCTTGTATA CATTCCACAC
  AAAGACTTAC ATGGCCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146275374	ENSMUSSNP641716	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs45790656					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5855667 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Tssr16009	transcription start site region 16009	1989 bp upstream