rs45792286 SNP Detail

Summary

• ID
  rs45792286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC CTCTCAGCCA CGCCCCATAC
  Y
  CTTCAGACGG GGATGGGGAT GGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138725615	ENSMUSSNP6089857	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324170088	CHEV_12_113913392	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45792286					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641615 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	349 bp upstream
Cpgi5173	CpG island 5173	272 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	249 bp upstream
Rr473553	regulatory region 473553	916 bp distal
Rr473554	regulatory region 473554	760 bp distal
Rr473555	regulatory region 473555	781 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	178 bp distal
Rr473558	regulatory region 473558	266 bp proximal
Rr473559	regulatory region 473559	457 bp proximal
Rr473560	regulatory region 473560	703 bp proximal
Tssr115391	transcription start site region 115391	758 bp downstream
Tssr117877	transcription start site region 117877	1154 bp upstream
Tssr117878	transcription start site region 117878	1095 bp upstream
Tssr117879	transcription start site region 117879	906 bp upstream
Tssr117880	transcription start site region 117880	814 bp upstream
Tssr117881	transcription start site region 117881	796 bp upstream
Tssr117882	transcription start site region 117882	417 bp upstream
Tssr117883	transcription start site region 117883	367 bp upstream
Tssr117884	transcription start site region 117884	344 bp upstream