rs45792868 SNP Detail

Summary

• ID
  rs45792868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118574123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAGGCA CCATCATAGC
  CAGAAGAGAC TTGTGGGCAC CCGTAGCTTC TACATCACGT CTTTACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACAATCTCTA GCTAAGCCGA AGAGAACTTG
  GCCTGTGGAC TCTGCCTGTC ATGCCAACAT TCTGTGCCTC AGTTTTCTCA TCTGTGGTGT
  Y
  GTTGTTGTTA AGTGGTTCAT AATCATACCG CAGAAACGGC AGGTTTGGGT GACAACCCTA
  CAGAGTAGAT GACAGGTGTC TTAGGCTCAC TACTGCGGTG GTGGATCACC ATGACCAAAG
  CAACCTGGGG AGCAAAGGAT TTATGTGGCA CTGTGCGGTC ACTGAAGGAA GTCAAGACAG
  GAAGTCAAAC GGGGCTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60830994	NES16020013	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45792868					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60830994	NES16020013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118574123 () rs orientation: forward

Symbol	Name	Function Class
Rr366840	regulatory region 366840	within coordinates
Rr618906	regulatory region 618906	321 bp distal
Rr618907	regulatory region 618907	497 bp proximal
Tssr48424	transcription start site region 48424	210 bp downstream
Tssr48425	transcription start site region 48425	1427 bp upstream
Tssr48426	transcription start site region 48426	1452 bp upstream
Tssr52899	transcription start site region 52899	1210 bp upstream