rs45793402 SNP Detail

Summary

• ID
  rs45793402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156057371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG ACAGCCTGTG TGTTTTTCTG
  Y
  CCCGGGTAAC AGAAACAACC AAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60330231	NES15828211	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C
ss145791105	ENSMUSSNP2438238	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs45793402					SNP	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330231	NES15828211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156057371 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	447 bp distal
Rr421147	regulatory region 421147	within coordinates
Rr421148	regulatory region 421148	161 bp distal
Rr421149	regulatory region 421149	41 bp distal
Rr421150	regulatory region 421150	836 bp proximal