rs45794562 SNP Detail

Summary

• ID
  rs45794562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCGGGT GCCGGGCAAG
  TGCAAGGCCA TGAACGGCAC GGCGAACCCG CTGCTGGACC GGGAGGAACA CTGTCTGCGG
  CTAGGGGAAA GCTTCGAGAA GCGGCCGCGG GCCTCCTTCC ACACGATTCG CTGTGAGTGA
  GCGCCCCTCC AGGTTCACTT GGGGCTCCCT GGCCGCCACG TGCAAGCCCA GACTCCCCTG
  R
  CTAATCCCGG CTCGAAAGCG TCGCTTTCCT TACCTCTCAT CCCTTAGCCT CTGGAACTTC
  GATCTGCTCT TTTACTTTGA AATCTCTTCT CCCAAACCAA ACCTCTGATT GCTGCCAACT
  ATTCTTTTAC TTTACAGTCT CAAATACCAC TTCAGAAAGT CATAGCCCCT TTATTTCAAA
  TTCCCCTTCC CAGCCCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709804	NES15559265	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss139235043	ENSMUSSNP2453552	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45794562					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709804	NES15559265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	within coordinates
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	1174 bp upstream
Mettl6	methyltransferase 6, methylcytidine	400 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	1073 bp downstream
Tssr124944	transcription start site region 124944	345 bp downstream
Tssr124945	transcription start site region 124945	259 bp downstream
Tssr124946	transcription start site region 124946	977 bp upstream
Tssr127965	transcription start site region 127965	1175 bp upstream
Tssr127966	transcription start site region 127966	455 bp upstream
Tssr127967	transcription start site region 127967	386 bp upstream